| Protein ZmGATA13 | |
|---|---|
|
ZmGATA13 is a protein in the C2C2-GATA family.
|
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| Information | |
| TF Name: | ZmGATA13 |
| Species: | Maize |
| TF Family: | C2C2-GATA |
| Gene Name(Synonym): | GATA13 |
| Uniprot ID: | K7VQ40 |
| Subgenome: | 2 |
Protein ZmGATA13
ZmGATA13 is a protein in the C2C2-GATA family.
| Overview of domains present in v5 transcripts | |
|---|---|
| PF00320 | |
| Zm00001eb371070_T001 |  |
| Zm00001eb371070_T002 | |
Protein-DNA Interactions
Meme Logos for Maize v4 Gene IDs
| Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
|---|---|---|---|---|---|
| Zm00001d012757 | DAPseq |  |
sequence | fimo | position |
| Zm00001d012757 | DAPseq |  |
sequence | fimo | position |
| Zm00001d012757 | ChIPseq |  |
sequence | fimo | position |
| Zm00001d012757 | PChIPseq |  |
sequence | fimo | position |
Interactions where ZmGATA13 is the regulator
Interactions where ZmGATA13 is the target
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Zm00001eb371070_T001 from maize genome v5
Amino Acid Sequence
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MEAAASAEYGYYGGGAGPHETKTAGCGDHFVVDDLLALPPYDDEEEGATGETPLCLQPVKEEEGGLGNFSADSSIVVTAI
DSCSNSFSRLADDDFPGEFYEPYDQLVELEWLSNYMGEGEETFAAEDLEKLKLISGGFSPAAVNVSAPAPVGVASAASAT
QSGMFLPVPAKARSKRSRAAPGNWSSRLVVLPPTPASPPAPAASMAISPSESGISAQQAFRAKKPPPSKKKDAAAPAPAP
AEGRRCVHCDTDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVMSKHSNSHRKVLELRRQKEVVVQQPPH
VMGGAGGPAGGLMRMQSAMLLDGPVAAVSSSSPIVGGDEFLIHQHLGTADYRQRI
MEAAASAEYGYYGGGAGPHETKTAGCGDHFVVDDLLALPPYDDEEEGATGETPLCLQPVKEEEGGLGNFSADSSIVVTAI
DSCSNSFSRLADDDFPGEFYEPYDQLVELEWLSNYMGEGEETFAAEDLEKLKLISGGFSPAAVNVSAPAPVGVASAASAT
QSGMFLPVPAKARSKRSRAAPGNWSSRLVVLPPTPASPPAPAASMAISPSESGISAQQAFRAKKPPPSKKKDAAAPAPAP
AEGRRCVHCDTDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVMSKHSNSHRKVLELRRQKEVVVQQPPH
VMGGAGGPAGGLMRMQSAMLLDGPVAAVSSSSPIVGGDEFLIHQHLGTADYRQRI
MEAAASAEYGYYGGGAGPHETKTAGCGDHFVVDDLLALPPYDDEEEGATGETPLCLQPVKEEEGGLGNFSADSSIVVTAI
DSCSNSFSRLADDDFPGEFYEPYDQLVELEWLSNYMGEGEETFAAEDLEKLKLISGGFSPAAVNVSAPAPVGVASAASAT
QSGMFLPVPAKARSKRSRAAPGNWSSRLVVLPPTPASPPAPAASMAISPSESGISAQQAFRAKKPPPSKKKDAAAPAPAP
AEGRRCVHCDTDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVMSKHSNSHRKVLELRRQKEVVVQQPPH
VMGGAGGPAGGLMRMQSAMLLDGPVAAVSSSSPIVGGDEFLIHQHLGTADYRQRI
MEAAASAEYGYYGGGAGPHETKTAGCGDHFVVDDLLALPPYDDEEEGATGETPLCLQPVKEEEGGLGNFSADSSIVVTAI
DSCSNSFSRLADDDFPGEFYEPYDQLVELEWLSNYMGEGEETFAAEDLEKLKLISGGFSPAAVNVSAPAPVGVASAASAT
QSGMFLPVPAKARSKRSRAAPGNWSSRLVVLPPTPASPPAPAASMAISPSESGISAQQAFRAKKPPPSKKKDAAAPAPAP
AEGRRCVHCDTDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVMSKHSNSHRKVLELRRQKEVVVQQPPH
VMGGAGGPAGGLMRMQSAMLLDGPVAAVSSSSPIVGGDEFLIHQHLGTADYRQRI
MEAAASAEYGYYGGGAGPHETKTAGCGDHFVVDDLLALPPYDDEEEGATGETPLCLQPVKEEEGGLGNFSADSSIVVTAI
DSCSNSFSRLADDDFPGEFYEPYDQLVELEWLSNYMGEGEETFAAEDLEKLKLISGGFSPAAVNVSAPAPVGVASAASAT
QSGMFLPVPAKARSKRSRAAPGNWSSRLVVLPPTPASPPAPAASMAISPSESGISAQQAFRAKKPPPSKKKDAAAPAPAP
AEGRRCVHCDTDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVMSKHSNSHRKVLELRRQKEVVVQQPPH
VMGGAGGPAGGLMRMQSAMLLDGPVAAVSSSSPIVGGDEFLIHQHLGTADYRQRI
| Secondary Structure Color Code | |
|---|---|
| BEND | region with high backbone curvature without specific hydrogen bonding |
| HELX_LH_PP_P | left-handed polyproline helix |
| HELX_RH_3T_P | right-handed 3-10 helix |
| HELX_RH_AL_P | right-handed alpha helix |
| HELX_RH_PI_P | right-handed pi helix |
| STRN | beta strand |
| TURN_TY1_P | type I turn |
| UNDETERMINED | no data available |
| Domains Present | |
|---|---|
| PF00320 |
|
| Hover here to show all domains | |
Nucleotide Sequence
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TCTGCGTCATCTCATTTCCGTTTCC...
TCTGCGTCATCTCATTTCCGTTTCCGTCTCTCCCTCTCCTCGCCCACACGTCCAAAACCGAAGGGAGCAAACGAACAAAACCCGGCCGAGTAACGCAGGAGACGAAGCTGCGGAAGGCGAGCAAGCACGATGGAGGCGGCAGCGTCAGCCGAGTACGGGTACTACGGCGGAGGCGCGGGCCCACACGAGACGAAGACCGCCGGGTGCGGGGACCACTTCGTCGTGGACGACCTCCTCGCGCTGCCGCCGTACGACGACGAGGAGGAGGGGGCGACAGGCGAGACCCCGCTGTGCCTGCAGCCTGTCAAGGAGGAGGAGGGCGGCCTCGGGAATTTCTCGGCCGACTCGTCCATCGTCGTCACAGCAATCGACAGCTGCAGCAACTCCTTCTCTAGGCTAGCCGACGACGACTTCCCGGGGGAATTCTACGAGCCGTACGACCAACTGGTGGAGCTAGAATGGCTATCAAACTACATGGGCGAGGGCGAGGAAACTTTCGCGGCGGAGGACCTGGAGAAGCTGAAGCTCATTTCCGGTGGGTTCTCCCCGGCGGCTGTGAACGTGTCAGCACCAGCTCCAGTGGGCGTAGCTTCAGCCGCCTCTGCGACACAGTCCGGTATGTTCCTGCCGGTCCCGGCAAAGGCCCGTAGCAAGCGGTCCCGCGCAGCTCCGGGCAACTGGTCGTCACGGTTGGTCGTGCTCCCGCCGACCCCGGCCTCACCACCGGCCCCTGCAGCGTCCATGGCCATTTCGCCCTCGGAGTCCGGCATCTCGGCGCAGCAGGCGTTCCGCGCCAAGAAGCCGCCGCCGTCGAAGAAGAAAGACGCGGCGGCACCGGCACCGGCACCGGCAGAAGGGCGACGGTGCGTGCACTGCGACACGGACAAGACGCCGCAGTGGAGGACGGGGCCCATGGGCCCCAAGACGCTGTGCAACGCGTGCGGGGTGCGGTACAAGTCGGGGCGGCTGGTGCCGGAGTACAGGCCCGCGGCGAGCCCCACCTTCGTGATGTCCAAGCACTCCAACTCCCACCGAAAGGTGCTGGAGCTGCGCCGCCAGAAGGAGGTGGTAGTGCAGCAGCCGCCGCACGTGATGGGCGGCGCCGGCGGTCCTGCAGGCGGGCTGATGCGCATGCAGAGCGCGATGCTGTTGGACGGGCCGGTGGCGGCGGTGTCGTCGTCGTCCCCCATCGTCGGCGGCGACGAGTTTTTGATCCACCAGCACTTAGGGACGGCAGACTACCGGCAGCGCATCTAACTAGATGAGTTTTTGATCAGTTAGCCTACTAGCCCAGTAATAATCAATATGCGCACCAGCTTAAATCCAAGTACCCTCCTTAAAAACATGAAAGAACTAATAATCTTGCCTTAATTAATTAATTAGGAGTTATTTTTCCTCTTCACTATATTTTGTTTATTAATTAGTTGCTGTGTTCCGGTTCAGATCCTTGGAAATTTTTTCGTGGCGACTTTCGTATGGTTTTGTATCTCTCTTTTTTTTTATTTTTTGCTAGACTCTCCTAATTAACATGCCTATGAGAACTCTACGAGAGAGAGAGAGAGAGAGTTTTCCTATCTATTTTCTTCCTTTGTTTCTTAGCATTATATATGTAATTTAAGGGGCTAGCTCTCGTTCTGCTTCCGGTCCGGAGCACGCATGAAAAGAAGACTGGAAATTTTGGTAATTT
GRMZM2G044576_T01 from maize genome v3
Amino Acid Sequence
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MEAAASAEYGYYGGGAGPHETKTAGCGDHFVVDDLLALPPYDDEEEGATGETPLCLQPVKEEEGGLGNFSADSSIVVTAI
DSCSNSFSRLADDDFPGEFYEPYDQLVELEWLSNYMGEGEETFAAEDLEKLKLISGGFSPAAVNVSAPAPVGVASAASAT
QSGMFLPVPAKARSKRSRAAPGNWSSRLVVLPPTPASPPAPAASMAISPSESGISAQQAFRAKKPPPSKKKDAAAPAPAP
AEGRRCVHCDTDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVMSKHSNSHRKVLELRRQKEVVVQQPPH
VMGGAGGPAGGLMRMQSAMLLDGPVAAVSSSSPIVGGDEFLIHQHLGTADYRQRI
Nucleotide Sequence
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TCTCCGCGCTCCAGCTCCACGCCAA...
TCTCCGCGCTCCAGCTCCACGCCAATTAAACCCTACTCTACTGCTTCTTTCTCTCTCTTCTCTCTCTGCGTCATCTCATTTCCGTTTCCGTCTCTCCCTCTCCTCGCCCACACGTCCAAAACCGAAGGGAGCAAACGAACAAAACCCGGCCGAGTAACGCAGGAGACGAAGCTGCGGAAGGCGAGCAAGCACGATGGAGGCGGCAGCGTCAGCCGAGTACGGGTACTACGGCGGAGGCGCGGGCCCACACGAGACGAAGACCGCCGGGTGCGGGGACCACTTCGTCGTGGACGACCTCCTCGCGCTGCCGCCGTACGACGACGAGGAGGAGGGGGCGACAGGCGAGACCCCGCTGTGCCTGCAGCCTGTCAAGGAGGAGGAGGGCGGCCTCGGGAATTTCTCGGCCGACTCGTCCATCGTCGTCACAGCAATCGACAGCTGCAGCAACTCCTTCTCTAGGCTAGCCGACGACGACTTCCCGGGGGAATTCTACGAGCCGTACGACCAACTGGTGGAGCTAGAATGGCTATCAAACTACATGGGCGAGGGCGAGGAAACTTTCGCGGCGGAGGACCTGGAGAAGCTGAAGCTCATTTCCGGTGGGTTCTCCCCGGCGGCTGTGAACGTGTCAGCACCAGCTCCAGTGGGCGTAGCTTCAGCCGCCTCTGCGACACAGTCCGGTATGTTCCTGCCGGTCCCGGCAAAGGCCCGTAGCAAGCGGTCCCGCGCAGCTCCGGGCAACTGGTCGTCACGGTTGGTCGTGCTCCCGCCGACCCCGGCCTCACCACCGGCCCCTGCAGCGTCCATGGCCATTTCGCCCTCGGAGTCCGGCATCTCGGCGCAGCAGGCGTTCCGCGCCAAGAAGCCGCCGCCGTCGAAGAAGAAAGACGCGGCGGCACCGGCACCGGCACCGGCAGAAGGGCGACGGTGCGTGCACTGCGACACGGACAAGACGCCGCAGTGGAGGACGGGGCCCATGGGCCCCAAGACGCTGTGCAACGCGTGCGGGGTGCGGTACAAGTCGGGGCGGCTGGTGCCGGAGTACAGGCCCGCGGCGAGCCCCACCTTCGTGATGTCCAAGCACTCCAACTCCCACCGAAAGGTGCTGGAGCTGCGCCGCCAGAAGGAGGTGGTAGTGCAGCAGCCGCCGCACGTGATGGGCGGCGCCGGCGGTCCTGCAGGCGGGCTGATGCGCATGCAGAGCGCGATGCTGTTGGACGGGCCGGTGGCGGCGGTGTCGTCGTCGTCCCCCATCGTCGGCGGCGACGAGTTTTTGATCCACCAGCACTTAGGGACGGCAGACTACCGGCAGCGCATCTAACTAGATGAGTTTTTGATCAGTTAGCCTACTAGCCCAGTAATAATCAATATGCGCACCAGCTTAAATCCAAGTACCCTCCTTAAAAACATGAAAGAACTAATAATCTTGCCTTAATTAATTAATTAGGAGTTATTTTTCCTCTTCACTATATTTTGTTTATTAATTAGTTGCTGTGTTCCGGTTCAGATCCTTGGAAATTTTTTCGTGGCGACTTTCGTATGGTTTTGTATCTCTCTTTTTTTTTATTTTTTGCTAGACTCTCCTAATTAACATGCCTATGAGAACTCTACGAGAGAGAGAGAGAGAGAGTTTTCCTATCTATTTTCTTCCTTTGTTTCTTAGCATTATATATGTAATTTAAGGGGCTAGCTCTCGTTCTGCTTCCGGTCCGGAGCACGCATGAAAAGAAGACTGGAAATTTTGGTAA
Zm00001d012757_T001 from maize genome v4
Amino Acid Sequence
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MEAAASAEYGYYGGGAGPHETKTAGCGDHFVVDDLLALPPYDDEEEGATGETPLCLQPVKEEEGGLGNFSADSSIVVTAI
DSCSNSFSRLADDDFPGEFYEPYDQLVELEWLSNYMGEGEETFAAEDLEKLKLISGGFSPAAVNVSAPAPVGVASAASAT
QSGMFLPVPAKARSKRSRAAPGNWSSRLVVLPPTPASPPAPAASMAISPSESGISAQQAFRAKKPPPSKKKDAAAPAPAP
AEGRRCVHCDTDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVMSKHSNSHRKVLELRRQKEVVVQQPPH
VMGGAGGPAGGLMRMQSAMLLDGPVAAVSSSSPIVGGDEFLIHQHLGTADYRQRI
Nucleotide Sequence
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TCTGCGTCATCTCATTTCCGTTTCC...
TCTGCGTCATCTCATTTCCGTTTCCGTCTCTCCCTCTCCTCGCCCACACGTCCAAAACCGAAGGGAGCAAACGAACAAAACCCGGCCGAGTAACGCAGGAGACGAAGCTGCGGAAGGCGAGCAAGCACGATGGAGGCGGCAGCGTCAGCCGAGTACGGGTACTACGGCGGAGGCGCGGGCCCACACGAGACGAAGACCGCCGGGTGCGGGGACCACTTCGTCGTGGACGACCTCCTCGCGCTGCCGCCGTACGACGACGAGGAGGAGGGGGCGACAGGCGAGACCCCGCTGTGCCTGCAGCCTGTCAAGGAGGAGGAGGGCGGCCTCGGGAATTTCTCGGCCGACTCGTCCATCGTCGTCACAGCAATCGACAGCTGCAGCAACTCCTTCTCTAGGCTAGCCGACGACGACTTCCCGGGGGAATTCTACGAGCCGTACGACCAACTGGTGGAGCTAGAATGGCTATCAAACTACATGGGCGAGGGCGAGGAAACTTTCGCGGCGGAGGACCTGGAGAAGCTGAAGCTCATTTCCGGTGGGTTCTCCCCGGCGGCTGTGAACGTGTCAGCACCAGCTCCAGTGGGCGTAGCTTCAGCCGCCTCTGCGACACAGTCCGGTATGTTCCTGCCGGTCCCGGCAAAGGCCCGTAGCAAGCGGTCCCGCGCAGCTCCGGGCAACTGGTCGTCACGGTTGGTCGTGCTCCCGCCGACCCCGGCCTCACCACCGGCCCCTGCAGCGTCCATGGCCATTTCGCCCTCGGAGTCCGGCATCTCGGCGCAGCAGGCGTTCCGCGCCAAGAAGCCGCCGCCGTCGAAGAAGAAAGACGCGGCGGCACCGGCACCGGCACCGGCAGAAGGGCGACGGTGCGTGCACTGCGACACGGACAAGACGCCGCAGTGGAGGACGGGGCCCATGGGCCCCAAGACGCTGTGCAACGCGTGCGGGGTGCGGTACAAGTCGGGGCGGCTGGTGCCGGAGTACAGGCCCGCGGCGAGCCCCACCTTCGTGATGTCCAAGCACTCCAACTCCCACCGAAAGGTGCTGGAGCTGCGCCGCCAGAAGGAGGTGGTAGTGCAGCAGCCGCCGCACGTGATGGGCGGCGCCGGCGGTCCTGCAGGCGGGCTGATGCGCATGCAGAGCGCGATGCTGTTGGACGGGCCGGTGGCGGCGGTGTCGTCGTCGTCCCCCATCGTCGGCGGCGACGAGTTTTTGATCCACCAGCACTTAGGGACGGCAGACTACCGGCAGCGCATCTAACTAGATGAGTTTTTGATCAGTTAGCCTACTAGCCCAGTAATAATCAATATGCGCACCAGCTTAAATCCAAGTACCCTCCTTAAAAACATGAAAGAACTAATAATCTTGCCTTAATTAATTAATTAGGAGTTATTTTTCCTCTTCACTATATTTTGTTTATTAATTAGTTGCTGTGTTCCGGTTCAGATCCTTGGAAATTTTTTCGTGGCGACTTTCGTATGGTTTTGTATCTCTCTTTTTTTTTATTTTTTGCTAGACTCTCCTAATTAACATGCCTATGAGAACTCTACGAGAGAGAGAGAGAGAGAGTTTTCCTATCTATTTTCTTCCTTTGTTTCTTAGCATTATATATGTAATTTAAGGGGCTAGCTCTCGTTCTGCTTCCGGTCCGGAGCACGCATGAAAAGAAGACTGGAAATTTTGGTAATTT
Zm00001eb371070_T002 from maize genome v5
Amino Acid Sequence
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MEAAASAEYGYYGGGAGPHETKTAGCGDHFVVDDLLALPPYDDEEEGATGETPLCLQPVKEEEGGLGNFSADSSIVVTAI
DSCSNSFSRLADDDFPGEFYEPYDQLVELEWLSNYMGEGEETFAAEDLEKLKLISGGFSPAAVNVSAPAPVGVASAASAT
QSASMAISPSESGISAQQAFRAKKPPPSKKKDAAAPAPAPAEGRRCVHCDTDKTPQWRTGPMGPKTLCNACGVRYKSGRL
VPEYRPAASPTFVMSKHSNSHRKVLELRRQKEVVVQQPPHVMGGAGGPAGGLMRMQSAMLLDGPVAAVSSSSPIVGGDEF
LIHQHLGTADYRQRI
Nucleotide Sequence
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TCTGCGTCATCTCATTTCCGTTTCC...
TCTGCGTCATCTCATTTCCGTTTCCGTCTCTCCCTCTCCTCGCCCACACGTCCAAAACCGAAGGGAGCAAACGAACAAAACCCGGCCGAGTAACGCAGGAGACGAAGCTGCGGAAGGCGAGCAAGCACGATGGAGGCGGCAGCGTCAGCCGAGTACGGGTACTACGGCGGAGGCGCGGGCCCACACGAGACGAAGACCGCCGGGTGCGGGGACCACTTCGTCGTGGACGACCTCCTCGCGCTGCCGCCGTACGACGACGAGGAGGAGGGGGCGACAGGCGAGACCCCGCTGTGCCTGCAGCCTGTCAAGGAGGAGGAGGGCGGCCTCGGGAATTTCTCGGCCGACTCGTCCATCGTCGTCACAGCAATCGACAGCTGCAGCAACTCCTTCTCTAGGCTAGCCGACGACGACTTCCCGGGGGAATTCTACGAGCCGTACGACCAACTGGTGGAGCTAGAATGGCTATCAAACTACATGGGCGAGGGCGAGGAAACTTTCGCGGCGGAGGACCTGGAGAAGCTGAAGCTCATTTCCGGTGGGTTCTCCCCGGCGGCTGTGAACGTGTCAGCACCAGCTCCAGTGGGCGTAGCTTCAGCCGCCTCTGCGACACAGTCCGCGTCCATGGCCATTTCGCCCTCGGAGTCCGGCATCTCGGCGCAGCAGGCGTTCCGCGCCAAGAAGCCGCCGCCGTCGAAGAAGAAAGACGCGGCGGCACCGGCACCGGCACCGGCAGAAGGGCGACGGTGCGTGCACTGCGACACGGACAAGACGCCGCAGTGGAGGACGGGGCCCATGGGCCCCAAGACGCTGTGCAACGCGTGCGGGGTGCGGTACAAGTCGGGGCGGCTGGTGCCGGAGTACAGGCCCGCGGCGAGCCCCACCTTCGTGATGTCCAAGCACTCCAACTCCCACCGAAAGGTGCTGGAGCTGCGCCGCCAGAAGGAGGTGGTAGTGCAGCAGCCGCCGCACGTGATGGGCGGCGCCGGCGGTCCTGCAGGCGGGCTGATGCGCATGCAGAGCGCGATGCTGTTGGACGGGCCGGTGGCGGCGGTGTCGTCGTCGTCCCCCATCGTCGGCGGCGACGAGTTTTTGATCCACCAGCACTTAGGGACGGCAGACTACCGGCAGCGCATCTAACTAGATGAGTTTTTGATCAGTTAGCCTACTAGCCCAGTAATAATCAATATGCGCACCAGCTTAAATCCAAGTACCCTCCTTAAAAACATGAAAGAACTAATAATCTTGCCTTAATTAATTAATTAGGAGTTATTTTTCCTCTTCACTATATTTTGTTTATTAATTAGTTGCTGTGTTCCGGTTCAGATCCTTGGAAATTTTTTCGTGGCGACTTTCGTATGGTTTTGTATCTCTCTTTTTTTTTATTTTTTGCTAGACTCTCCTAATTAACATGCCTATGAGAACTCTACGAGAGAGAGAGAGAGAGAGTTTTCCTATCTATTTTCTTCCTTTGTTTCTTAGCATTATATATGTAATTTAAGGGGCTAGCTCTCGTTCTGCTTCCGGTCCGGAGCACGCATGAAAAGAAGACTGGAAATTTTGGT
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